endrov.typeParticleMeasure
Class ParticleMeasure

java.lang.Object
  endrov.data.EvContainer
      endrov.data.EvObject
          endrov.typeParticleMeasure.ParticleMeasure

public class ParticleMeasure
extends EvObject

Measurements of particles - identified regions in stacks. Designed to handle channels by lazy evaluation of each stack.
There is by design no connection of the ID of one frame to the next, this interpretation is done outside by the user.
This object can also be used as a quick property output for other things. In that case the frame and ID should be set to 0 unless there is a good reason for something else.
Output data can not normally be modified - a special filter could do it. Filters act by lazily rewriting one measure to another. TODO what about channel comparisons?

Nested Class Summary

static class	ParticleMeasure.ColumnSet Data for one particle.
static class	ParticleMeasure.Frame Information about one frame - Just a list of particles, with a lazy evaluator
static interface	ParticleMeasure.ParticleFilter Filter of particle measure data TODO can use the same structure also for adding data!
static class	ParticleMeasure.Well Information about one well

Field Summary

static FlowType	FLOWTYPE
static java.lang.String	metaType Static *

Fields inherited from class endrov.data.EvContainer

author, containerIcon, coreMetadataModified, dateCreate, dateLastModify, isGeneratedData, metaObject, ostBlobID

Constructor Summary

ParticleMeasure()
Empty measure

Method Summary

void	addFrameColumn(java.lang.String s)
void	addParticleColumn(java.lang.String s)
void	addWellColumn(java.lang.String s)
void	buildMetamenu(javax.swing.JMenu menu, EvContainer parentObject) Attach menu entries specific for this type of object
void	clearData()
EvObject	cloneEvObject() Get a deep copy of the object, not including children
ParticleMeasure	filter(ParticleMeasure.ParticleFilter filter)
java.util.SortedSet<java.lang.String>	getFrameColumns() Get which columns exist for each well/frame
java.lang.String	getMetaTypeDesc() Human readable name
java.util.SortedSet<java.lang.String>	getParticleColumns() Get which columns exist for each particle
ParticleMeasure.Well	getWell(java.lang.String wellName) Get a well
java.util.SortedSet<java.lang.String>	getWellColumns() Get which columns exist for each well
java.util.Set<java.lang.String>	getWellNames()
static void	initPlugin() Plugin declaration
void	loadMetadata(org.jdom.Element e) Class: XML Reader and writer of this type of meta object *
java.lang.String	saveMetadata(org.jdom.Element e) Serialize object
void	setWell(java.lang.String wellName, ParticleMeasure.Well well) Set a well

Methods inherited from class endrov.data.EvObject

cloneEvObjectRecursive, cloneUsingSerialize, getContainerIcon

Methods inherited from class endrov.data.EvContainer

addMetaObject, getChild, getChildNames, getFreeChildName, getIdObjects, getIdObjectsRecursive, getMetaContainer, getMetaObject, getObjects, isMetadataModified, putChild, removeMetaObjectByValue, setMetadataModified, setMetadataNotModified

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

metaType

public static final java.lang.String metaType

Static *

See Also:

Constant Field Values

FLOWTYPE

public static final FlowType FLOWTYPE

Constructor Detail

ParticleMeasure

public ParticleMeasure()

Empty measure

Method Detail

getWell

public ParticleMeasure.Well getWell(java.lang.String wellName)

Get a well

setWell

public void setWell(java.lang.String wellName,
                    ParticleMeasure.Well well)

Set a well

getParticleColumns

public java.util.SortedSet<java.lang.String> getParticleColumns()

Get which columns exist for each particle

getFrameColumns

public java.util.SortedSet<java.lang.String> getFrameColumns()

Get which columns exist for each well/frame

getWellColumns

public java.util.SortedSet<java.lang.String> getWellColumns()

Get which columns exist for each well

buildMetamenu

public void buildMetamenu(javax.swing.JMenu menu,
                          EvContainer parentObject)

Description copied from class: EvObject

Attach menu entries specific for this type of object

Specified by:

buildMetamenu in class EvObject

parentObject - TODO

getMetaTypeDesc

public java.lang.String getMetaTypeDesc()

Description copied from class: EvObject

Human readable name

Specified by:

getMetaTypeDesc in class EvObject

cloneEvObject

public EvObject cloneEvObject()

Description copied from class: EvObject

Get a deep copy of the object, not including children

Specified by:

cloneEvObject in class EvObject

addFrameColumn

public void addFrameColumn(java.lang.String s)

addWellColumn

public void addWellColumn(java.lang.String s)

addParticleColumn

public void addParticleColumn(java.lang.String s)

filter

public ParticleMeasure filter(ParticleMeasure.ParticleFilter filter)

getWellNames

public java.util.Set<java.lang.String> getWellNames()

clearData

public void clearData()

loadMetadata

public void loadMetadata(org.jdom.Element e)

Class: XML Reader and writer of this type of meta object *

Specified by:

loadMetadata in class EvObject

saveMetadata

public java.lang.String saveMetadata(org.jdom.Element e)

Description copied from class: EvObject

Serialize object

Specified by:

saveMetadata in class EvObject

initPlugin

public static void initPlugin()

Plugin declaration