endrov.typeLineage.modw
Class LineageModelExtension

java.lang.Object
  endrov.typeLineage.modw.LineageModelExtension

All Implemented Interfaces:

Viewer3DMouseListener, Viewer3DWindowHook, java.awt.event.ActionListener, java.util.EventListener

public class LineageModelExtension
extends java.lang.Object
implements Viewer3DWindowHook, java.awt.event.ActionListener, Viewer3DMouseListener

Lineage extension to Model Window

Nested Class Summary

static class

LineageModelExtension.ShowExp How to show expression patterns

Field Summary

javax.swing.JMenu	miDefaultNonselectMeshRender
javax.swing.JMenuItem	miDefaultNonselectMeshRenderOff
javax.swing.JMenuItem	miDefaultNonselectMeshRenderSolid
javax.swing.JMenuItem	miDefaultNonselectMeshRenderWireframe
javax.swing.JMenu	miDefaultSelectMeshRender
javax.swing.JMenuItem	miDefaultSelectMeshRenderOff
javax.swing.JMenuItem	miDefaultSelectMeshRenderSolid
javax.swing.JMenuItem	miDefaultSelectMeshRenderWireframe
javax.swing.JMenuItem	miHideSelectedNuc
javax.swing.JMenuItem	miSelectVisible
javax.swing.JMenuItem	miSetTraceWidth
javax.swing.JCheckBoxMenuItem	miShowDelaunay
javax.swing.JCheckBoxMenuItem	miShowDiv
javax.swing.JRadioButtonMenuItem	miShowExpColorAND
javax.swing.JRadioButtonMenuItem	miShowExpColorMod
javax.swing.JRadioButtonMenuItem	miShowExpMarkerColor
javax.swing.JRadioButtonMenuItem	miShowExpMarkerSize
javax.swing.JRadioButtonMenuItem	miShowNamesAll
javax.swing.JRadioButtonMenuItem	miShowNamesNone
javax.swing.JRadioButtonMenuItem	miShowNamesSelected
javax.swing.JMenuItem	miShowNucSize0
javax.swing.JMenuItem	miShowNucSize100
javax.swing.JMenuItem	miShowNucSize25
javax.swing.JMenuItem	miShowNucSize50
javax.swing.JMenuItem	miShowNucSize75
javax.swing.JMenuItem	miShowNucSizeCustom
javax.swing.JMenuItem	miShowSelectedNuc
javax.swing.JCheckBoxMenuItem	miShowSimpleTraces
javax.swing.JRadioButtonMenuItem	miShowTraceAll
javax.swing.JRadioButtonMenuItem	miShowTraceNone
javax.swing.JRadioButtonMenuItem	miShowTraceSel
javax.swing.JMenu	mShowExp
javax.swing.ButtonGroup	mShowExpGroup
javax.swing.JMenu	mShowNames
javax.swing.ButtonGroup	mShowNamesGroup
javax.swing.JMenu	mShowNucSize
javax.swing.JMenu	mShowTrace
javax.swing.ButtonGroup	mShowTraceGroup
double	nucMagnification
LineageModelExtension.ShowExp	showExpAs
EvColor	traceColor Color of the movement trace of particles

Constructor Summary

LineageModelExtension()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e)
java.util.Collection<BoundingBox3D>	adjustScale() Adjust the scale
java.util.Collection<javax.vecmath.Vector3d>	autoCenterMid() Give suitable center of all objects
double	autoCenterRadius(javax.vecmath.Vector3d mid) Given a middle position, figure out radius required to fit objects
boolean	canRender(EvObject ob)
void	commitModifyingNuc() Currently modified particles is finalized.
void	createHook(Viewer3DWindow w)
void	datachangedEvent()
void	displayFinal(javax.media.opengl.GL glin, java.util.List<TransparentRenderer3D> transparentRenderers) Render graphics
void	displayInit(javax.media.opengl.GL gl) Prepare for rendering
void	displaySelect(javax.media.opengl.GL gl) Render for selection
void	drawSelectSphere(javax.media.opengl.GL2 gl, double r)
void	fillMenus()
EvDecimal	getFirstFrame()
EvDecimal	getLastFrame()
java.awt.Color	getTraceColor(Lineage.Particle nuc)
java.util.Collection<Lineage>	getVisibleLineages()
void	initOpenGL(javax.media.opengl.GL gl)
static void	initPlugin() Plugin declaration
boolean	mouseClicked(java.awt.event.MouseEvent e, javax.swing.JPopupMenu menu) Handle mouse click.
boolean	mouseDragged(java.awt.event.MouseEvent e, int dx, int dy)
void	mouseEntered(java.awt.event.MouseEvent e)
void	mouseExited(java.awt.event.MouseEvent e)
void	mouseMoved(java.awt.event.MouseEvent e)
void	mousePressed(java.awt.event.MouseEvent e)
void	mouseReleased(java.awt.event.MouseEvent e)
void	readPersonalConfig(org.jdom.Element e)
void	savePersonalConfig(org.jdom.Element e)
void	setDefaultNonselectMeshRenderMode(Lineage.MeshRenderMode rm)
void	setDefaultSelectMeshRenderMode(Lineage.MeshRenderMode rm)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nucMagnification

public double nucMagnification

mShowNames

public javax.swing.JMenu mShowNames

miShowNamesNone

public javax.swing.JRadioButtonMenuItem miShowNamesNone

miShowNamesSelected

public javax.swing.JRadioButtonMenuItem miShowNamesSelected

miShowNamesAll

public javax.swing.JRadioButtonMenuItem miShowNamesAll

mShowNamesGroup

public javax.swing.ButtonGroup mShowNamesGroup

mShowExp

public javax.swing.JMenu mShowExp

miShowExpColorMod

public javax.swing.JRadioButtonMenuItem miShowExpColorMod

miShowExpColorAND

public javax.swing.JRadioButtonMenuItem miShowExpColorAND

miShowExpMarkerColor

public javax.swing.JRadioButtonMenuItem miShowExpMarkerColor

miShowExpMarkerSize

public javax.swing.JRadioButtonMenuItem miShowExpMarkerSize

mShowExpGroup

public javax.swing.ButtonGroup mShowExpGroup

miShowSelectedNuc

public javax.swing.JMenuItem miShowSelectedNuc

miHideSelectedNuc

public javax.swing.JMenuItem miHideSelectedNuc

mShowTrace

public javax.swing.JMenu mShowTrace

miShowTraceNone

public javax.swing.JRadioButtonMenuItem miShowTraceNone

miShowTraceSel

public javax.swing.JRadioButtonMenuItem miShowTraceSel

miShowTraceAll

public javax.swing.JRadioButtonMenuItem miShowTraceAll

mShowTraceGroup

public javax.swing.ButtonGroup mShowTraceGroup

miShowSimpleTraces

public javax.swing.JCheckBoxMenuItem miShowSimpleTraces

miSetTraceWidth

public javax.swing.JMenuItem miSetTraceWidth

mShowNucSize

public javax.swing.JMenu mShowNucSize

miShowNucSize0

public javax.swing.JMenuItem miShowNucSize0

miShowNucSize25

public javax.swing.JMenuItem miShowNucSize25

miShowNucSize50

public javax.swing.JMenuItem miShowNucSize50

miShowNucSize75

public javax.swing.JMenuItem miShowNucSize75

miShowNucSize100

public javax.swing.JMenuItem miShowNucSize100

miShowNucSizeCustom

public javax.swing.JMenuItem miShowNucSizeCustom

miSelectVisible

public javax.swing.JMenuItem miSelectVisible

miDefaultSelectMeshRender

public javax.swing.JMenu miDefaultSelectMeshRender

miDefaultNonselectMeshRender

public javax.swing.JMenu miDefaultNonselectMeshRender

miDefaultSelectMeshRenderOff

public javax.swing.JMenuItem miDefaultSelectMeshRenderOff

miDefaultSelectMeshRenderSolid

public javax.swing.JMenuItem miDefaultSelectMeshRenderSolid

miDefaultSelectMeshRenderWireframe

public javax.swing.JMenuItem miDefaultSelectMeshRenderWireframe

miDefaultNonselectMeshRenderOff

public javax.swing.JMenuItem miDefaultNonselectMeshRenderOff

miDefaultNonselectMeshRenderSolid

public javax.swing.JMenuItem miDefaultNonselectMeshRenderSolid

miDefaultNonselectMeshRenderWireframe

public javax.swing.JMenuItem miDefaultNonselectMeshRenderWireframe

showExpAs

public LineageModelExtension.ShowExp showExpAs

traceColor

public EvColor traceColor

Color of the movement trace of particles

miShowDiv

public javax.swing.JCheckBoxMenuItem miShowDiv

miShowDelaunay

public javax.swing.JCheckBoxMenuItem miShowDelaunay

Constructor Detail

LineageModelExtension

public LineageModelExtension()

Method Detail

fillMenus

public void fillMenus()

Specified by:

fillMenus in interface Viewer3DWindowHook

commitModifyingNuc

public void commitModifyingNuc()

Currently modified particles is finalized. Commit changes. Only for dragging at the moment

createHook

public void createHook(Viewer3DWindow w)

Specified by:

createHook in interface Viewer3DWindowHook

mouseClicked

public boolean mouseClicked(java.awt.event.MouseEvent e,
                            javax.swing.JPopupMenu menu)

Description copied from interface: Viewer3DMouseListener

Handle mouse click. Return true if the event is swallowed (thus the caller will not try to handle the event). A menu is provided that can be filled in with additional right-click entries

Specified by:

mouseClicked in interface Viewer3DMouseListener

mouseDragged

public boolean mouseDragged(java.awt.event.MouseEvent e,
                            int dx,
                            int dy)

Specified by:

mouseDragged in interface Viewer3DMouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Specified by:

mouseEntered in interface Viewer3DMouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Specified by:

mouseExited in interface Viewer3DMouseListener

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent e)

Specified by:

mouseMoved in interface Viewer3DMouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Specified by:

mousePressed in interface Viewer3DMouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface Viewer3DMouseListener

readPersonalConfig

public void readPersonalConfig(org.jdom.Element e)

Specified by:

readPersonalConfig in interface Viewer3DWindowHook

savePersonalConfig

public void savePersonalConfig(org.jdom.Element e)

Specified by:

savePersonalConfig in interface Viewer3DWindowHook

datachangedEvent

public void datachangedEvent()

Specified by:

datachangedEvent in interface Viewer3DWindowHook

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

setDefaultSelectMeshRenderMode

public void setDefaultSelectMeshRenderMode(Lineage.MeshRenderMode rm)

setDefaultNonselectMeshRenderMode

public void setDefaultNonselectMeshRenderMode(Lineage.MeshRenderMode rm)

canRender

public boolean canRender(EvObject ob)

Specified by:

canRender in interface Viewer3DWindowHook

getVisibleLineages

public java.util.Collection<Lineage> getVisibleLineages()

initOpenGL

public void initOpenGL(javax.media.opengl.GL gl)

Specified by:

initOpenGL in interface Viewer3DWindowHook

displayInit

public void displayInit(javax.media.opengl.GL gl)

Prepare for rendering

Specified by:

displayInit in interface Viewer3DWindowHook

displaySelect

public void displaySelect(javax.media.opengl.GL gl)

Render for selection

Specified by:

displaySelect in interface Viewer3DWindowHook

getTraceColor

public java.awt.Color getTraceColor(Lineage.Particle nuc)

displayFinal

public void displayFinal(javax.media.opengl.GL glin,
                         java.util.List<TransparentRenderer3D> transparentRenderers)

Render graphics

Specified by:

displayFinal in interface Viewer3DWindowHook

drawSelectSphere

public void drawSelectSphere(javax.media.opengl.GL2 gl,
                             double r)

adjustScale

public java.util.Collection<BoundingBox3D> adjustScale()

Adjust the scale

Specified by:

adjustScale in interface Viewer3DWindowHook

autoCenterMid

public java.util.Collection<javax.vecmath.Vector3d> autoCenterMid()

Give suitable center of all objects

Specified by:

autoCenterMid in interface Viewer3DWindowHook

autoCenterRadius

public double autoCenterRadius(javax.vecmath.Vector3d mid)

Given a middle position, figure out radius required to fit objects

Specified by:

autoCenterRadius in interface Viewer3DWindowHook

getFirstFrame

public EvDecimal getFirstFrame()

Specified by:

getFirstFrame in interface Viewer3DWindowHook

getLastFrame

public EvDecimal getLastFrame()

Specified by:

getLastFrame in interface Viewer3DWindowHook

initPlugin

public static void initPlugin()

Plugin declaration