The R-HMMER package

Java code

We can provide Java code for much of the content covered in the article. It runs much faster but has not been cleaned up for distribution. It is available to request.

Citing

J Henriksson, B P Piasecki, K Lend, T R Bürglin, P Swoboda (2013)
Finding ciliary genes – a computational approach
Methods in enzymology, 525, ch.16, p.327-351