General

• System Requirements
• License
• Installing Endrov
• Configuring the microscope
• Open hardware
• Features need update
• General Navigation
• Gamepad Support
• Configuration files
• Papers and Citing
• FAQ
• Endrov compared to SIMI Biocell

Data

• Data saving and loading overview (recommended reading!)
• Short introduction to OST
• Loading imagesets consisting of many individual files
• Making OST in Endrov
• The OST daemon for converting imagesets
• Organizing with ImServ
• OST Daemon Tutorial

We need feedback on importing. It has not been tested enough, and might be overcomplicated.

Working with Endrov

• Screencasts
• Comments on image processing
• Comments on compression
• Making 2D movies
• Scripting Tutorial
• Lineaging Tutorial
• Volume Rendering
• Using flows TODO
• Controlling the microscope TODO
• Using Particle Measure

Unfinished

• ROI Tutorial unfinished
• Endrov image data internals
• Console Commands

Deprecated

• Filters & Filter Sequences Tutorial out of date
• Importing (many) files stored in proprietary formats (e.g. LSM) with the OST maker Deprecated

Screencasts

• Flows to detect lines on leafs
• C.elegans 2008.2 in the model window
• The new lineage window

Tools to make screencasts

Technical Documents

• The OST imageset whitepaper out of date
• Spatio-temporal recordings in OpenLab

For Developers and Advanced Users

Resources

• JavaDoc (but it might be easier to read the source)
• Source code (gitweb)
• Indentation rules for Eclipse settings (you want to do Save as... on this link)
• Bug tracker (SF)
• Wishlist (SF)
• Code statistics (Ohloh)

Information

• Setting up a development environment
• Endrov as a library
• External libraries used
• Version numbering
• Coding convention
• How to create plugins
• How to create new image operations
• How to create new data types
• How to extend the user interface
• Commercial development
• Endrov in Matlab
• Endrov in R

• TODO (out of date)
• Overview of Endrov from a designers point of view (out of date)
• Development Roadmap (out of date)
• Applets for Developers (maybe out of date)
• Webstart for Developers (maybe out of date)